10/13/2021 0 Comments Hotspotter Software For Mac
Not available through official Windows app store. Not available on Macs.The best video editing software options enable you to produce high-quality videos right from your computer.Dindel is a program for calling small indels from short-read sequence data (‘next generation sequence data’). It is currently designed to handle only Illumina data. Dindel takes BAM files with mapped Illumina read data and enables researchers to detect small indels and produce a VCF file of all the variant calls.The Hotspotter isn’t a guarantee, but it can provide reasonable confidence that the open network (s) it detects will get your main Wi-Fi device online. Pros: Tells all about nearby networks.Advanced tools for creating effects based videos Simple & powerful plug-in for creating video collages Multiple updates throughout year including new, exclusive features and creative packs 1 HotSpotter User Guide Jon Crall Jason Parham Chuck Stewart Department of Computer Science Rensselaer Polytechnic Institute2 1 Usage This document presumes that you have downloaded and installed the Windows or Mac version of the HotSpotter sofware, and describes the basic steps of running the program to identify individual animals. Mac version isn’t quite as comprehensive as Windows versionPowerDirector is a premium video editing program that offers easy-to-navigate features for beginners, expert editors, and everyone in between. And as more people have begun spending more time and working from home, software that enables them to edit videos from their computers has been in high demand.You can find dozens of video editing programs on the market with a variety of different features and price tags. However, with so many options available, it can be challenging to determine which software might be right for your needs and how much you should expect to pay.We have compiled a list of the best programs for beginners, professionals, and everyone in between. Fully loaded with basic and premium features Easy learning curve to get you editing in no time PowerDirector 365 - Best video editing software for Mac Read on to learn more about the best video editing software options.Best Video Editing Software for Mac 1.
To Open or Create a new Database: File Open Database HotSpotter assumes that empty folders are given as new databases. In each succeeding run, it will start by opening the previous database. 1.1 Opening the Program When HotSpotter is first run, the program prompts the user to open a database or create a new one. This guide will use the mac notation. Just know that the control key (Ctrl) on windows is equivalent to the command key (Cmd = ) on the mac. This is accomplished by Convenience Convert All Images to Chips This option should be used in the relatively rare case that the animal occupies almost the entire image. The automatic version is not very sophisticated: it simply assigns each image to be its own ROI. (The sub-image extracted from an ROI is called a chip.) The ROIs must be specified first and this can be done either manually or automatically. These are automatically added to the database and may be seen under Image View 1.3 Defining Chips with ROIs and Orientation Before identifying an animal in an image or, equivalently, finding other images that show the same animal - a region of interest (ROI) an orientation must be assigned. 1.2 Importing images In order to add one or more images to the database, run File Import Images 13 HotSpotter will will copy all selected images into its images directory. In order to specify an ROI, the Image Table should be highlighted and then the image should be selected. Each ROI should include most of the body of the animal anything that might be a distinguishing feature so users should err on the side of making the ROI too large rather than too small. Multiple ROIs are allowed for each image. Side-view pictures of standing animals, such as zebras or giraffes. This is usually sufficient when taking normal e.g. In the case of an annotation mistake, an ROI can be reselected using Actions Reselect ROI or removed entirely using Actions Delete ROI The default orientation is horizontal, and this is set internally by HotSpotter. (Back in the Image Table view, users can see the relationship between the Image ID and the image file name.) Similarly, the Chip ID is the unique index HotSpotter applies to each chip. In order to specify an orientation other than the default (horizontal) orientation, the user must enter orientation mode: Actions Reselect Orientation 26 The Image ID is the unique numerical index HotSpotter applies to each image. For frog images this is the spine. The orientation is best determined by drawing an axis within the ROI of the animal in a way that can be repeated for each animal. A user may double-click on a Chip Name to edit it. This denotes an unidentified chip. Initially, before an image is recognized, the Chip Name column value will be specified as (four underscores). Options -> Toggle Plot Widget: shows the results plot in a separate pane. 2 Additional Tools and Tricks Here is a brief discussion of are a few additional tricks and options for running HotSpotter: Actions -> Select Next: selects either the next image that does not already have an ROI or the next chip without an orientation. Use of copying and pasting from one chip name to the other makes this process less prone to typing errors. This is as simple as double clicking on the name and assigning it. Convenience -> Batch Change Name: change all chip instances of a given name to a new name. Convenience -> Convert All Images to Chips: make each image its own ROI and therefore image chip. For now, these are not very well documented and should only be used with extreme care or collaboration with the HotSpotter team. Options -> Edit Preferences: change the behavior of HotSpotter. Convenience -> Assign Matches Above Threshold: HotSpotter will automatically run each chip in the database as a query and assigns it as a match to any chips whose matching score is above a user-define threshold. HotSpotter will automatically import existing metadata from StripeSpotter databases. Convenience -> Add Metadata Property: record metadata as a series of one or more attribute/value pairs for any user defined metadata. Output is written to the database directory. Run Name Consistency Experiment: (primarily for developer usage) Runs an experiment to see if HotSpotter agrees with the current labeling. Output is written to the database directory. Convenience -> View Internal Directory: Opens the current database s.hs internals directory Matching Experiment: (primarily for developer usage) Runs an experiment to see what matches HotSpotter assigns to each chip. Convenience -> View Source Directory: (primarily for developer usage) Opens the HotSpotter source directory. Deleting the~/.hotspotter 1 folder may fix some issues. When updating to new versions these can sometimes cause problems. These files remember the last database opened as well as other preferences. HotSpotter keeps a small set of preference files in the user s home directory. If the error persists, the following will fix common errors: Delete your preference directory. Hotspotter Software For Mac OSX 10Mac OSX 10.8 Gatekeeper For Mac OSX 10.8 Mountain Lion users this app might not run. The user may have to restart HotSpotter. This will cause the program to recompute all of its data. From here the computed directory may be deleted. Running the command(convenience View Internal Directory) will open user database dir/.hs internals directory. Delete the Computed Directory If something looks corrupted or ROIs are being oddly drawn, the user should consider deleting the computed directory. The Developer If all else fails users should send an Please include a detailed description of the error, the output of the(convenience Write Logs), and what was being done when it happened. To re-enable security after running HotSpotter once, repeat the above changes to your preferences, except click onmac App Store and identified developers. Install HotSpotter and run it. Close thesystem Preferences window. In the bottom half of thegeneral tab, there will be the following selection: Allow applications downloaded from: ( ) Mac App Store (X) Mac App Store and identified developers ( ) Anywhere 1 Note that~denotes the user s home folder 68 SelectAnywhere and subsequently selectallow From Anywhere in the drop down warning. It is preferred to use 32-bit builds of each dependency when specified. The software is untested using 64-bit python. 4.1 Windows Install the following dependencies in order. Users who want to use HotSpotter without modification should download the installer package instead. Primarily, this includes Python 2.7.3, Qt, and OpenCV, but it also includes several supporting packages. Before executing HotSpotter from the source code users should ensure that their environment is set up correctly. PyQt4 32-bit (a) Download: 5. Qt Library bit (a) Download: 4. MinGW (C / C++) (a) Download: download?source=files (c) REQUIRED: C and C++ COMPILER 3. XQuartz - This dependency is required for FreeType ( and libpng ( 3. Qt Library 4.8 (a) Download: 2. PIL 32-bit (a) Download: Mac OSX Install the following dependencies in order. Matplotlib 32-bit (a) Download: 7. NumPy (a) Download: download?source=files (b) sudo python setup.py install 6. PyQt4 (a) Download: (b) sudo python configure.py (c) sudo make (d) sudo make install 5.
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